Hi everyone! This video is about one of my favorite experiments in biology: the Luria-Delbruck fluctuation test experiment. I used the Manim Python library to make the animation, with help from Claude Code. Credit to the Grant Sanderson and the Manim Community for making this...
Hi everyone! This video is about one of my favorite experiments in biology: the Luria-Delbruck fluctuation test experiment.
I used the Manim Python library to make the animation, with help from Claude Code. Credit to the Grant Sanderson and the Manim Community for making this awesome library! If you want to try it out for yourself, here is their website:
https://docs.manim.community/en/stable/index.html
Thanks for watching and let me know if you have any questions!
Hi everyone! If you enjoyed this series and want to learn more about bioinformatics and computational biology, here's a website I made with a list of all the educational resources I found helpful: https://learnbioinformatics.org/ If you know of any other good resources that...
Hi everyone! If you enjoyed this series and want to learn more about bioinformatics and computational biology, here's a website I made with a list of all the educational resources I found helpful:
https://learnbioinformatics.org/
If you know of any other good resources that aren't already included, let me know in the comments and I'll add them.
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to do some checks on the results from the GWAS....
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to do some checks on the results from the GWAS.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to make a Manhattan plot of the GWAS results....
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to make a Manhattan plot of the GWAS results.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to use the UCSC Genome Browser to explore the...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to use the UCSC Genome Browser to explore the SNPs that came up as significant in our GWAS analysis.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to actually do the GWAS analysis by iterating...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to actually do the GWAS analysis by iterating over the SNPs and using the logistic regression method to calculate a p-value for each one.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to calculate the minor allele frequency for each...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to calculate the minor allele frequency for each SNP, and use it to filter down the list of SNPs to check in the GWAS.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to read the GWAS dataset into Python. GitHub...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to read the GWAS dataset into Python.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about the additivity assumption in GWAS analysis. GitHub...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about the additivity assumption in GWAS analysis.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is a review of some of the math behind the modeling technique...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is a review of some of the math behind the modeling technique (called logistic regression) that we're going to use in the GWAS project.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
StatQuest Series on Logistic Regression:
https://www.youtube.com/playlist?list=PLblh5JKOoLUKxzEP5HA2d-Li7IJkHfXSe
Thanks for watching and let me know if you have any questions!
Hi everyone, today (November 29, 2025) makes it exactly 5 years since I started this channel and uploaded the first video! Anyway just wanted to thank you guys for watching these videos, and for making this such a fun and rewarding project for me to work on. Looking forward...
Hi everyone, today (November 29, 2025) makes it exactly 5 years since I started this channel and uploaded the first video! Anyway just wanted to thank you guys for watching these videos, and for making this such a fun and rewarding project for me to work on. Looking forward to another 5 years of hopefully making useful videos for you guys about bioinformatics and computational biology!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to download the mock dataset we'll be using, and...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is about how to download the mock dataset we'll be using, and a review of the format of the data.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Video on Realistic Dataset Format (VCF and gVCF):
https://www.youtube.com/watch?v=cBDZSGf9HRE
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is an introduction to our second project, doing a genome-wide...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is an introduction to our second project, doing a genome-wide association study (GWAS).
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Video on Realistic Dataset Format (VCF and gVCF):
https://www.youtube.com/watch?v=cBDZSGf9HRE
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is an introduction to our modern understanding of genetics,...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is an introduction to our modern understanding of genetics, updating the Mendelian model to incorporate our knowledge of DNA.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is a quick review of Mendelian genetics, before we get into...
Hi everyone! This tutorial series is an introduction to bioinformatics for programmers.The prerequisite is just basic Python. No prior biology knowledge required -- we'll cover it, starting from scratch! This video is a quick review of Mendelian genetics, before we get into the material for the second project.
GitHub Repo:
https://github.com/mikesaint-antoine/Comp_Bio_Tutorials
Thanks for watching and let me know if you have any questions!